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After scanning, the VirusTotal Website Check extension reports Bad URLs and samples for a domain. When scanning this domain at virustotal.com, there are no Bad URLs for it - the website is clean.
This is a VirusTotal Website Check extension bug with ID EXTPLESK-517, which is planned to be fixed in future extension updates.
Currently, there is no workaround.
If the scanner at virustotal.com reports no issues, the website is clean.